Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs2933308 chr3:11055624 A/G 6.28E-5 527 37.73 39.23 40.58 KM Plot
KIRC rs2988411 chr9:6734997 T/A 4.46E-5 522 40.78 39.7 15.63 KM Plot
KIRC rs2996064 chr9:6730880 T/C 5.14E-5 521 41 39.7 15.63 KM Plot
KIRC rs2996065 chr9:6731403 C/T 3.24E-5 519 41.13 39.53 17 KM Plot
KIRC rs3017281 chr11:125439423 T/C 7.03E-6 522 1.43 41.73 39.53 KM Plot
KIRC rs3031138 chr21:21258705 GTTT/G 6.28E-5 521 40.28 31.72 5.6 KM Plot
KIRC rs306196 chr2:6627807 A/G 2.66E-5 527 10.97 47.87 38.93 KM Plot
KIRC rs3094591 chr6:31360672 G/A 9.27E-6 514 38.95 46.37 1.88 KM Plot
KIRC rs33998336 chr10:81949597 G/A 1.61E-6 521 38.93 51.03 3.93 KM Plot
KIRC rs34019522 chr2:2623763 A/G 4.06E-5 521 38.98 44.57 8.35 KM Plot
KIRC rs34027471 chr6:26073411 T/G 5.65E-9 523 41.27 35.7 3.37 KM Plot
KIRC rs34078362 chr9:6716511 C/A 2.27E-5 518 41 42.67 20.67 KM Plot
KIRC rs34087434 chr9:6713094 ATC/A 6.72E-6 521 40.78 42.33 19.68 KM Plot
KIRC rs34093944 chr10:126200579 CA/C 5.06E-6 525 39.85 37.83 3.67 KM Plot
KIRC rs34109387 chr3:48352055 TC/T 3.27E-5 523 39.62 41.27 19.13 KM Plot